Dr.-Ing. Tomás Arias Vergara
Dr.-Ing. Tomás Arias Vergara, M. Sc.
I received a B.S. in Electronics Engineering from the University of Antioquia (UdeA, Colombia) in 2014, a Master of Science degree at the same institution in 2017, and a Ph.D. in a joint program between the UdeA and the FAU in 2022. Since 2015, my research has focused on speech processing and machine learning methods for the analysis of pathological speech signals resulting from neurological (e.g., Parkinson’s disease), structural (e.g., children with cleft lip and palate), and perceptual (e.g., hearing loss) disorders. I have also investigated the effect of the natural aging process on speech, participated in developing Android-based applications for collecting and analyzing data from Parkinson’s disease patients and adults/children with hearing loss, and performed research on automatic methods for the analysis of high-speed videoendoscopy data of people with voice disorders.
Projects
2024
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A multimodal approach for automatic generation of radiology reports using chest X-ray images, clinical free-text, and spoken commands.
(FAU Funds)
Term: January 15, 2024 - January 14, 2025Advancements in Artificial Intelligence (AI) methods have enabled thedevelopment of Large Language Models (LLMs) capable of generating informationfrom user instructions and supporting various tasks in education, research,healthcare, and others. AI has also impacted the field of medical imaging withseveral deep learning models capable of achieving expert-level performanceacross different tasks, e.g., detection, segmentation, and assisted clinicaldiagnosis. In addition, open-source Automatic Speech Recognition (ASR) systemscan be incorporated as modules in AI-based systems. This proposed fundedproject aims to combine LLMs, medical imaging, and speech recognition using AImethods to generate high-quality radiology reports from chest X-ray images.
2017
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Training Network on Automatic Processing of PAthological Speech
(Third Party Funds Group – Overall project)
Term: November 1, 2017 - October 31, 2021
Funding source: Innovative Training Networks (ITN)
URL: https://www.tapas-etn-eu.org/There are an increasing number of people across Europe with debilitating speech pathologies (e.g., due to stroke, Parkinson's, etc). These groups face communication problems that can lead to social exclusion. They are now being further marginalised by a new wave of speech technology that is increasingly woven into everyday life but which is not robust to atypical speech. TAPAS is a Horizon 2020 Marie Skłodowska-Curie Actions Innovative Training Network European Training Network (MSCA-ITN-ETN) project that aims to transform the well being of these people.
The TAPAS work programme targets three key research problems:
(a) Detection: We will develop speech processing techniques for early detection of conditions that impact on speech production. The outcomes will be cheap and non-invasive diagnostic tools that provide early warning of the onset of progressive conditions such as Alzheimer's and Parkinson's.
(b) Therapy: We will use newly-emerging speech processing techniques to produce automated speech therapy tools. These tools will make therapy more accessible and more individually targeted. Better therapy can increase the chances of recovering intelligible speech after traumatic events such a stroke or oral surgery.
(c) Assisted Living: We will re-design current speech technology so that it works well for people with speech impairments and also helps in making informed clinical choices. People with speech impairments often have other co-occurring conditions making them reliant on carers. Speech-driven tools for assisted-living are a way to allow such people to live more independently.
TAPAS adopts an inter-disciplinary and multi-sectorial approach. The consortium includes clinical practitioners, academic researchers and industrial partners, with expertise spanning speech engineering, linguistics and clinical science. All members have expertise in some element of pathological speech. This rich network will train a new generation of 15 researchers, equipping them with the skills and resources necessary for lasting success.
Publications
2024
Journal Articles
VOAT: Voice Onset Analysis Tool
In: SoftwareX 27 (2024), Article No.: 101802
ISSN: 2352-7110
DOI: 10.1016/j.softx.2024.101802
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Machine learning based estimation of hoarseness severity using sustained vowelsa)
In: Journal of the Acoustical Society of America 155 (2024), p. 381-395
ISSN: 0001-4966
DOI: 10.1121/10.0024341
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Vowel onset measures and their reliability, sensitivity and specificity: A systematic literature review
In: PLoS ONE 19 (2024), p. e0301786-
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0301786
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Conference Contributions
Transforming Cardiovascular Health: a Transformer-Based Approach to Continuous, Non-Invasive Blood Pressure Estimation via Radar Sensing
ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (Seoul, April 14, 2024 - April 19, 2024)
In: ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), New York City: 2024
DOI: 10.1109/ICASSP48485.2024.10446988
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SNOBERT: A Benchmark for clinical notes entity linking in the SNOMED CT clinical terminology
27th International Conference on Pattern Recognition (Kolkata, India, December 1, 2024 - December 5, 2024)
In: Proceedings of the 27th International Conference on Pattern Recognition 2024 2024
URL: https://arxiv.org/abs/2405.16115
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2023
Authored Books
Impact of Including Pathological Speech in Pre-training on Pathology Detection
Springer Science and Business Media Deutschland GmbH, 2023
ISBN: 9783031404979
DOI: 10.1007/978-3-031-40498-6_13
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Journal Articles
Nyquist Plot Parametrization for Quantitative Analysis of Vibration of the Vocal Folds
In: Journal of Voice (2023)
ISSN: 0892-1997
DOI: 10.1016/j.jvoice.2023.01.014
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Conference Contributions
Impact of Including Pathological Speech in Pre-training on Pathology Detection
TSD 2023: Text, Speech, and Dialogue (Pilsen, September 4, 2023 - September 6, 2023)
In: Kamil Ekštein, František Pártl, Miloslav Konopík (ed.): Text, Speech, and Dialogue, Cham: 2023
DOI: 10.1007/978-3-031-40498-6_13
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An Automatic Multimodal Approach to Analyze Linguistic and Acoustic Cues on Parkinson's Disease Patients
24th International Speech Communication Association, Interspeech 2023 (Dublin, IRL, August 20, 2023 - August 24, 2023)
In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2023
DOI: 10.21437/Interspeech.2023-2287
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Automatic Assessment of Alzheimer's across Three Languages Using Speech and Language Features
24th International Speech Communication Association, Interspeech 2023 (Dublin, IRL, August 20, 2023 - August 24, 2023)
In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2023
DOI: 10.21437/Interspeech.2023-2079
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Speaking Clearly, Understanding Better: Predicting the L2 Narrative Comprehension of Chinese Bilingual Kindergarten Children Based on Speech Intelligibility Using a Machine Learning Approach
Interspeech 2023 (Dublin, August 20, 2023 - August 24, 2023)
In: Interspeech 2023 2023
DOI: 10.21437/Interspeech.2023-2057
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Transferring Quantified Emotion Knowledge for the Detection of Depression in Alzheimer’s Disease Using Forestnets
International Conference on Acoustics, Speech, and Signal Processing (ICASSP) (Rhodes Island, June 4, 2023 - June 10, 2023)
In: ICASSP 2023 2023
DOI: 10.1109/ICASSP49357.2023.10095219
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Measuring Phonological Precision in Children with Cleft Lip and Palate
24th International Speech Communication Association, Interspeech 2023 (Dublin, August 20, 2023 - August 24, 2023)
In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2023
DOI: 10.21437/Interspeech.2023-2099
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2022
Authored Books
50 Shades of Gray: Effect of the Color Scale for the Assessment of Speech Disorders
Springer Science and Business Media Deutschland GmbH, 2022
ISBN: 9783031162695
DOI: 10.1007/978-3-031-16270-1_29
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Analysis of Pathological Speech Signals
Erlangen, Bayern, Germany: Logos Verlag Berlin GmbH, 2022
(Studien zur Mustererkennung, Vol.50)
ISBN: 978-3-8325-5561-0
URL: https://logos-verlag.eu/cgi-bin/engbuchmid?isbn=5561&lng=eng&id=
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Journal Articles
Adult Cochlear Implant Users Versus Typical Hearing Persons: An Automatic Analysis of Acoustic–Prosodic Parameters
In: Journal of Speech Language and Hearing Research 65 (2022), p. 4623-4636
ISSN: 1092-4388
DOI: 10.1044/2022_JSLHR-21-00116
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Interpreting acoustic features for the assessment of Alzheimer's disease using ForestNet
In: Smart Health 26 (2022), Article No.: 100347
ISSN: 2352-6483
DOI: 10.1016/j.smhl.2022.100347
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Machine learning based estimation of hoarseness severity from sustained vowels
In: Journal of the Acoustical Society of America 152 (2022), p. A141-A141
ISSN: 0001-4966
DOI: 10.1121/10.0015825
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Parameterization of voice onset for automatic assessment of Parkinson’s disease
In: Journal of the Acoustical Society of America 152 (2022), p. A140-A140
ISSN: 0001-4966
DOI: 10.1121/10.0015820
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Parameterization of voice onset for automatic assessment of Parkinson’s disease
In: Journal of the Acoustical Society of America 152 (2022), p. A140-A140
ISSN: 0001-4966
DOI: 10.1121/10.0015820
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Depression assessment in people with Parkinson's disease: The combination of acoustic features and natural language processing
In: Speech Communication 145 (2022), p. 10-20
ISSN: 0167-6393
DOI: 10.1016/j.specom.2022.09.001
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Depression assessment in people with Parkinson's disease: The combination of acoustic features and natural language processing
In: Speech Communication 145 (2022), p. 10-20
ISSN: 0167-6393
DOI: 10.1016/j.specom.2022.09.001
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Interpreting acoustic features for the assessment of Alzheimer's disease using ForestNet
In: Smart Health 26 (2022), Article No.: 100347
ISSN: 2352-6483
DOI: 10.1016/j.smhl.2022.100347
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Conference Contributions
High-speed video endoscopy to improve the diagnosis of voice disorders
DOI: 10.1055/s-0042-1746963
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50 Shades of Gray: Effect of the Color Scale for the Assessment of Speech Disorders
25th International Conference on Text, Speech, and Dialogue, TSD 2022 (Brno, CZE, September 6, 2022 - September 9, 2022)
In: Petr Sojka, Aleš Horák, Ivan Kopeček, Karel Pala (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
DOI: 10.1007/978-3-031-16270-1_29
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Alzheimer's Detection from English to Spanish Using Acoustic and Linguistic Embeddings
23rd Annual Conference of the International Speech Communication Association, INTERSPEECH 2022 (Incheon, September 18, 2022 - September 22, 2022)
In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2022
DOI: 10.21437/Interspeech.2022-10883
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CoachLea: an Android Application to Evaluate the Speech Production and Perception of Children with Hearing Loss
23rd Annual Conference of the International Speech Communication Association, INTERSPEECH 2022 (Incheon, KOR, September 18, 2022 - September 22, 2022)
In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2022
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CoachLea: an Android Application to Evaluate the Speech Production and Perception of Children with Hearing Loss
23rd Annual Conference of the International Speech Communication Association, INTERSPEECH 2022
URL: https://www.scopus.com/record/display.uri?eid=2-s2.0-85140086069∨igin=inward
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Wav2vec behind the Scenes: How end2end Models learn Phonetics
23rd Annual Conference of the International Speech Communication Association, INTERSPEECH 2022
DOI: 10.21437/Interspeech.2022-10865
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Wav2vec behind the Scenes: How end2end Models learn Phonetics
23rd Annual Conference of the International Speech Communication Association, INTERSPEECH 2022 (Incheon, September 18, 2022 - September 22, 2022)
In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2022
DOI: 10.21437/Interspeech.2022-10865
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2021
Journal Articles
Cognitive Determinants of Dysarthria in Parkinson's Disease: An Automated Machine Learning Approach
In: Movement Disorders (2021)
ISSN: 0885-3185
DOI: 10.1002/mds.28751
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The Phonetic Footprint of Parkinson's Disease
In: Computer Speech and Language 72 (2021)
ISSN: 0885-2308
DOI: 10.1016/j.csl.2021.101321
URL: https://www.sciencedirect.com/science/article/abs/pii/S0885230821001169
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Transfer learning helps to improve the accuracy to classify patients with different speech disorders in different languages
In: Pattern Recognition Letters (2021)
ISSN: 0167-8655
DOI: 10.1016/j.patrec.2021.04.011
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Conference Contributions
Acoustic and Linguistic Analyses to Assess Early-Onset and Genetic Alzheimer's Disease
ICASSP 2021-2021 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)
DOI: 10.1109/ICASSP39728.2021.9414009
URL: https://ieeexplore.ieee.org/abstract/document/9414009
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Emotional State Modeling for the Assessment of Depression in Parkinson’s Disease
24th International Conference on Text, Speech, and Dialogue, TSD 2021 (Olomouc, CZE, September 6, 2021 - September 9, 2021)
In: Kamil Ekštein, František Pártl, Miloslav Konopík (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2021
DOI: 10.1007/978-3-030-83527-9_39
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End-2-End Modeling of Speech and Gait from Patients with Parkinson’s Disease: Comparison Between High Quality Vs. Smartphone Data
ICASSP 2021-2021 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)
DOI: 10.1109/ICASSP39728.2021.9414729
URL: https://ieeexplore.ieee.org/abstract/document/9414729
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Influence of the Interviewer on the Automatic Assessment of Alzheimer’s Disease in the Context of the ADReSSo Challenge
22nd Annual Conference of the International Speech Communication Association, INTERSPEECH 2021 (, August 30, 2021 - September 3, 2021)
In: Proc. Interspeech 2021 2021
DOI: 10.21437/Interspeech.2021-1589
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Robust Automatic Speech Recognition for Call Center Applications
8th Workshop on Engineering Applications, WEA 2021 (Virtual, Online, October 6, 2021 - October 8, 2021)
In: Juan Carlos Figueroa-García, Yesid Díaz-Gutierrez, Elvis Eduardo Gaona-García, Alvaro David Orjuela-Cañón (ed.): Communications in Computer and Information Science 2021
DOI: 10.1007/978-3-030-86702-7_7
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The Phonetic Footprint of Covid-19
Interspeech 2021 (, August 30, 2021 - September 3, 2021)
In: Proc. Interspeech 2021 2021
DOI: 10.21437/Interspeech.2021-1488
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2020
Journal Articles
Automatic detection of Voice Onset Time in voiceless plosives using gated recurrent units
In: Digital Signal Processing 104 (2020), Article No.: 102779
ISSN: 1051-2004
DOI: 10.1016/j.dsp.2020.102779
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Parallel Representation Learning for the Classification of Pathological Speech: Studies on Parkinson's Disease and Cleft Lip and Palate
In: Speech Communication 122 (2020), p. 56-67
ISSN: 0167-6393
DOI: 10.1016/j.specom.2020.07.005
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Apkinson: the smartphone application for telemonitoring Parkinson's patients through speech, gait and hands movement
In: Neurodegenerative Disease Management (2020)
ISSN: 1758-2024
DOI: 10.2217/nmt-2019-0037
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Nonlinear dynamics and Poincare sections to model gait impairments in different stages of Parkinson's disease
In: Nonlinear Dynamics 100 (2020), p. 3253-3276
ISSN: 0924-090X
DOI: 10.1007/s11071-020-05691-7
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Nonlinear dynamics and Poincaré sections to model gait impairments in different stages of Parkinson’s disease
In: Nonlinear Dynamics (2020)
ISSN: 0924-090X
DOI: 10.1007/s11071-020-05691-7
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Conference Contributions
Acoustic characteristics of vot in plosive consonants produced by parkinson’s patients
23rd International Conference on Text, Speech, and Dialogue, TSD 2020 (Brno, September 8, 2020 - September 11, 2020)
In: Petr Sojka, Ivan Kopecek, Karel Pala, Aleš Horák (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
DOI: 10.1007/978-3-030-58323-1_33
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Surgical mask detection with deep recurrent phonetic models
Interspeech 2020
In: Interspeech 2020 2020
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Surgical mask detection with deep recurrent phonetic models
21st Annual Conference of the International Speech Communication Association, INTERSPEECH 2020
DOI: 10.21437/Interspeech.2020-1723
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2019
Book Contributions
Convolutional Neural Networks and a Transfer Learning Strategy to Classify Parkinson’s Disease from Speech in Three Different Languages
In: Ingela Nyström, Yanio Hernández Heredia, Vladimir Milián Núñez (ed.): Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, 2019, p. 697-706 (Image Processing, Computer Vision, Pattern Recognition, and Graphics, Vol.11896)
ISBN: 9783030339036
DOI: 10.1007/978-3-030-33904-3_66
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Multi-channel Convolutional Neural Networks for Automatic Detection of Speech Deficits in Cochlear Implant Users
In: Ingela Nyström, Yanio Hernández Heredia, Vladimir Milián Núñez (ed.): Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, 2019, p. 679-687 (Image Processing, Computer Vision, Pattern Recognition, and Graphics, Vol.11896)
ISBN: 9783030339036
DOI: 10.1007/978-3-030-33904-3_64
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Conference Contributions
Speech differences between CI users with pre- and postlingual onset of deafness detected by speech processing methods on voiceless to voice transitions
90. Jahresversammlung der Deutschen Gesellschaft für Hals-Nasen-Ohren-Heilkunde, Kopf- und Hals-Chirurgie (Estrel Congress Center Berlin, May 29, 2019 - June 1, 2019)
In: Laryngo-Rhino-Otol 2019 2019
DOI: 10.1055/s-0039-168632
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Consonant-to-Vowel/Vowel-to-Consonant Transitions to Analyze the Speech of Cochlear Implant Users.
Text, Speech, and Dialogue 2019 (Ljubljana, September 11, 2019 - September 13, 2019)
In: Kamil Ekštein (ed.): Lecture Notes in Computer Science 2019
DOI: 10.1007/978-3-030-27947-9_25
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Multi-channel Convolutional Neural Networks for Automatic Detection of Speech Deficits in Cochlear Implant Users
Iberoamerican Congress on Pattern Recognition
In: CIARP 2019: Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications 2019
DOI: 10.1007/978-3-030-33904-3_64
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Phone-attribute posteriors to evaluate the speech of cochlear implant users
20th Annual Conference of the International Speech Communication Association: Crossroads of Speech and Language, INTERSPEECH 2019 (Graz, September 15, 2019 - September 19, 2019)
In: Gernot Kubin, Thomas Hain, Bjorn Schuller, Dina El Zarka, Petra Hodl (ed.): Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH 2019
DOI: 10.21437/Interspeech.2019-2144
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2018
Journal Articles
Multimodal assessment of Parkinson's disease: a deep learning approach
In: IEEE Journal of Biomedical and Health Informatics (2018)
ISSN: 2168-2194
DOI: 10.1109/JBHI.2018.2866873
URL: https://ieeexplore.ieee.org/document/8444654
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Speaker models for monitoring Parkinson’s disease progression considering different communication channels and acoustic conditions
In: Speech Communication 101 (2018), p. 11-25
ISSN: 0167-6393
DOI: 10.1016/j.specom.2018.05.007
URL: https://www.sciencedirect.com/science/article/abs/pii/S0167639317304454
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Conference Contributions
A Multitask Learning Approach to Assess the Dysarthria Severity in Patients with Parkinson's Disease
INTERSPEECH
In: Proceedings of INTERSPEECH 2018
DOI: 10.21437/Interspeech.2018-1988
URL: https://www.isca-speech.org/archive/Interspeech_2018/abstracts/1988.html
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A Non-linear Dynamics Approach to Classify Gait Signals of Patients with Parkinson's Disease
5th Workshop on Engineering Applications (WEA) (Medellin, COLOMBIA, October 17, 2018 - October 19, 2018)
In: APPLIED COMPUTER SCIENCES IN ENGINEERING, WEA 2018, PT II, BERLIN: 2018
DOI: 10.1007/978-3-030-00353-1_24
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Automatic Intelligibility Assessment of Parkinson's Disease with Diadochokinetic Exercises
5th Workshop on Engineering Applications (WEA) (Medellin, October 17, 2018 - October 19, 2018)
In: APPLIED COMPUTER SCIENCES IN ENGINEERING, WEA 2018, PT II, BERLIN: 2018
DOI: 10.1007/978-3-030-00353-1_20
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Unobtrusive Monitoring of Speech Impairments of Parkinson's Disease Patients Through Mobile Devices
2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018
DOI: 10.1109/ICASSP.2018.8462332
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Unobtrusive Monitoring of Speech Impairments of Parkinson'S Disease Patients Through Mobile Devices
43rd IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)
DOI: 10.1109/ICASSP.2018.8462332
URL: https://ieeexplore.ieee.org/abstract/document/8462332
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2017
Authored Books
Speaker model to monitor the neurological state and the dysarthria level of patients with parkinson’s disease
Springer Verlag, 2017
ISBN: 9783319642055
DOI: 10.1007/978-3-319-64206-2_31
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Conference Contributions
Apkinson — A Mobile Monitoring Solution for Parkinson's Disease
Interspeech 2017
In: Interspeech 2017 2017
URL: https://www.researchgate.net/profile/Juan_Vasquez12/publication/319185470_Apkinson_-_A_Mobile_Monitoring_Solution_for_Parkinson's_Disease/links/59b9fecfa6fdcc68723177dc/Apkinson-A-Mobile-Monitoring-Solution-for-Parkinsons-Disease.pdf
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Parkinson’s disease progression assessment from speech using a mobile device-based application
20th International Conference on Text, Speech and Dialogue, TSD 2017
In: TSD 2017: Text, Speech, and Dialogue 2017
DOI: 10.1007/978-3-319-64206-2_42
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2016
Conference Contributions
Gender-dependent GMM-UBM for Tracking Parkinson's Disease Progression from Speech
12. ITG Fachtagung Sprachkommunikation (Paderborn)
In: Speech Communication - 12. ITG Fachtagung Sprachkommunikation, Berlin: 2016
URL: https://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2016/Arias-Vergara16-GGF.pdf
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