Frauke Wilm
Frauke Wilm, M. Sc.
Academic CV
- 08/2020 – 10/2024:
PhD Student at the Pattern Recognition Lab, FAU Erlangen-Nürnberg in Cooperation with Merck KGaA, Darmstadt
Research Topic: Digital Pathology - 04/2018 – 05/2020:
Master’s Degree in Medical Engineering with Focus on Medical Imaging and Data Processing, FAU Erlangen-Nürnberg
Master’s Thesis: “Computationally-Optimized Determination of Tumor Areas with Deep Neural Networks on Digitized HE-Stained Tissue Sections” - 10/2014 – 02/2018:
Bachelor’s Degree in Medical Engineering with Focus on Medical Imaging and Data Processing, FAU Erlangen-Nürnberg
Bachelor’s Thesis: “Entwicklung einer Smartphone Applikation zur Anwendung in einer Migränestudie”
Projects
No projects found.
Publications
2025
Unpublished Publications
Analysing Diffusion Segmentation for Medical Images
(2025)
DOI: 10.48550/arXiv.2403.14440
BibTeX: Download
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Rethinking U-net Skip Connections for Biomedical Image Segmentation
(2025)
DOI: 10.48550/arXiv.2402.08276
BibTeX: Download
, , , , , :- Mathias Öttl, Frauke Wilm, Jana Steenpass, Jingna Qiu, Matthias Rübner, Arndt Hartmann, Matthias Beckmann, Peter Fasching, Andreas Maier, Ramona Erber, Bernhard Kainz, Katharina Breininger:
Style-Extracting Diffusion Models for Semi-Supervised Histopathology Segmentation
(2025)
DOI: 10.48550/arXiv.2403.14429
BibTeX: Download
2024
Journal Articles
Author Correction: A comprehensive multi-domain dataset for mitotic figure detection (Scientific Data, (2023), 10, 1, (484), 10.1038/s41597-023-02327-4)
In: Scientific Data 11 (2024), Article No.: 717
ISSN: 2052-4463
DOI: 10.1038/s41597-024-03548-x
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Breast cancer survival prediction using an automated mitosis detection pipeline
In: Journal of Pathology: Clinical Research 10 (2024), Article No.: e70008
ISSN: 2056-4538
DOI: 10.1002/2056-4538.70008
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Domain generalization across tumor types, laboratories, and species — Insights from the 2022 edition of the Mitosis Domain Generalization Challenge
In: Medical Image Analysis 94 (2024), Article No.: 103155
ISSN: 1361-8415
DOI: 10.1016/j.media.2024.103155
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Multi-level cancer profiling through joint cell-graph representations
In: Smart Health 32 (2024), p. 100470
ISSN: 2352-6483
DOI: 10.1016/j.smhl.2024.100470
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Conference Contributions
Appearance-based Debiasing of Deep Learning Models in Medical Imaging
German Conference on Medical Image Computing, BVM 2024 (Erlangen, March 10, 2024 - March 12, 2024)
In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2024. BVM 2024, Wiesbaden: 2024
DOI: 10.1007/978-3-658-44037-4_9
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2023
Journal Articles
A comprehensive multi-domain dataset for mitotic figure detection
In: Scientific Data 10 (2023), Article No.: 484
ISSN: 2052-4463
DOI: 10.1038/s41597-023-02327-4
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Pan-tumor T-lymphocyte detection using deep neural networks: Recommendations for transfer learning in immunohistochemistry
In: Journal of Pathology Informatics 14 (2023), Article No.: 100301
ISSN: 2229-5089
DOI: 10.1016/j.jpi.2023.100301
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Mitosis domain generalization in histopathology images — The MIDOG challenge
In: Medical Image Analysis 84 (2023), Article No.: 102699
ISSN: 1361-8415
DOI: 10.1016/j.media.2022.102699
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Automated diagnosis of 7 canine skin tumors using machine learning on H&E-stained whole slide images
In: Veterinary Pathology (2023)
ISSN: 0300-9858
DOI: 10.1177/03009858231189205
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Conference Contributions
Adaptive Region Selection for Active Learning in Whole Slide Image Semantic Segmentation
In: The 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023) 2023
DOI: 10.48550/arXiv.2307.07168
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Abstract: Pan-tumor CAnine CuTaneous Cancer Histology (CATCH) Dataset
Bildverarbeitung für die Medizin Workshop, BVM 2023 (Braunschweig, July 2, 2023 - July 4, 2023)
In: Thomas M. Deserno, Heinz Handels, Andreas Maier, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2023
DOI: 10.1007/978-3-658-41657-7_45
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Improved HER2 Tumor Segmentation with Subtype Balancing Using Deep Generative Networks
20th IEEE International Symposium on Biomedical Imaging, ISBI 2023 (Cartagena, April 18, 2023 - April 21, 2023)
In: Proceedings - International Symposium on Biomedical Imaging 2023
DOI: 10.1109/ISBI53787.2023.10230503
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Mind the Gap: Scanner-Induced Domain Shifts Pose Challenges for Representation Learning in Histopathology
20th IEEE International Symposium on Biomedical Imaging, ISBI 2023 (Cartagena, April 18, 2023 - April 21, 2023)
In: Proceedings - International Symposium on Biomedical Imaging 2023
DOI: 10.1109/ISBI53787.2023.10230458
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Multi-scanner Canine Cutaneous Squamous Cell Carcinoma Histopathology Dataset
Bildverarbeitung für die Medizin Workshop, BVM 2023 (Braunschweig, July 2, 2023 - July 4, 2023)
In: Thomas M. Deserno, Heinz Handels, Andreas Maier, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2023
DOI: 10.1007/978-3-658-41657-7_46
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Reference Algorithms for the Mitosis Domain Generalization (MIDOG) 2022 Challenge
25th International Conference on Medical Image Computing and Computer-Assisted Intervention , MICCAI 2022 (Singapore, SGP, September 18, 2022 - September 22, 2022)
In: Bin Sheng, Marc Aubreville (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
DOI: 10.1007/978-3-031-33658-4_19
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2022
Journal Articles
Pan-tumor CAnine cuTaneous Cancer Histology (CATCH) dataset
In: Scientific Data 9 (2022), Article No.: 588
ISSN: 2052-4463
DOI: 10.1038/s41597-022-01692-w
BibTeX: Download
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Inter-species cell detection - datasets on pulmonary hemosiderophages in equine, human and feline specimens
In: Scientific Data 9 (2022)
ISSN: 2052-4463
DOI: 10.1038/s41597-022-01389-0
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Computer-assisted mitotic count using a deep learning–based algorithm improves interobserver reproducibility and accuracy
In: Veterinary Pathology 59 (2022), p. 211-226
ISSN: 0300-9858
DOI: 10.1177/03009858211067478
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Fast whole-slide cartography in colon cancer histology using superpixels and CNN classification
In: Journal of Medical Imaging 9 (2022)
ISSN: 2329-4310
DOI: 10.1117/1.JMI.9.2.027501
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Computer Assistance: A New Gold Standard for the Mitotic Count?
In: Journal of Comparative Pathology 191 (2022)
ISSN: 0021-9975
DOI: 10.1016/j.jcpa.2021.11.017
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Conference Contributions
Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge
24th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2021 (Strasbourg, FRA, September 27, 2021 - October 1, 2021)
In: Marc Aubreville, David Zimmerer, Mattias Heinrich (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
DOI: 10.1007/978-3-030-97281-3_1
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2021
Conference Contributions
Robust Quad-Tree based Registration on Whole Slide Images
MICCAI Computational Pathlogy (COMPAY) Workshop
BibTeX: Download
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Cell Detection for Asthma on Partially Annotated Whole Slide Images: Learning to be EXACT
German Workshop on Medical Image Computing, 2021 (Regensburg, March 7, 2021 - March 9, 2021)
In: Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (ed.): Informatik aktuell 2021
DOI: 10.1007/978-3-658-33198-6_36
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Dataset on Bi- and Multi-nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors
German Workshop on Medical Image Computing, 2021 (Regensburg, March 7, 2021 - March 9, 2021)
In: Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (ed.): Informatik aktuell 2021
DOI: 10.1007/978-3-658-33198-6_33
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Influence of Inter-Annotator Variability on Automatic Mitotic Figure Assessment
German Workshop on Medical Image Computing, 2021 (Regensburg, March 7, 2021 - March 9, 2021)
In: Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (ed.): Informatik aktuell 2021
DOI: 10.1007/978-3-658-33198-6_56
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Iterative Cross-Scanner Registration for Whole Slide Images
IEEE/CVF International Conference on Computer Vision (ICCVW)
In: 2021 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW 2021), LOS ALAMITOS: 2021
DOI: 10.1109/ICCVW54120.2021.00071
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2018
Conference Contributions
"MigraineMonitor" – Towards a System for the Prediction of Migraine Attacks using Electrostimulation
52th Annual Conference of the German Society for Biomedical Engineering (VDE|DGBMT) (Aachen, September 26, 2018 - September 28, 2018)
In: Current Directions in Biomedical Engineering 2018
DOI: 10.1515/cdbme-2018-0151
URL: https://www.mad.tf.fau.de/files/2018/09/2018-StefkeWilm-DGBMT-MigraineMonitor.pdf
BibTeX: Download
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