Mathias Oettl

2025

Journal Articles

• Öttl M., Steenpaß J., Wilm F., Qiu J., Rübner M., Lang-Schwarz C., Taverna C., Tava F., Hartmann A., Hübner H., Beckmann M., Fasching P., Maier A., Erber R., Breininger K.:
  Fully automatic HER2 tissue segmentation for interpretable HER2 scoring
  In: Journal of Pathology Informatics 17 (2025), Article No.: 100435
  ISSN: 2229-5089
  DOI: 10.1016/j.jpi.2025.100435
  BibTeX: Download

Conference Contributions

• Qiu J., Aubreville M., Wilm F., Öttl M., Utz J., Schlereth M., Breininger K.:
  Abstract: Leveraging Image Captions for Selective Whole Slide Image Annotation
  German Conference on Medical Image Computing (Regensburg, March 9, 2025 - March 11, 2025)
  In: Bildverarbeitung für die Medizin 2025, Wiesbaden: 2025
  DOI: 10.1007/978-3-658-47422-5_59
  BibTeX: Download
• Öttl M., Wilm F., Steenpaß J., Qiu J., Rübner M., Hartmann A., Beckmann M., Fasching P., Maier A., Erber R., Kainz B., Breininger K.:
  Style-Extracting Diffusion Models for Semi-supervised Histopathology Segmentation
  18th European Conference on Computer Vision, ECCV 2024 (Milan, September 29, 2024 - October 4, 2024)
  In: Aleš Leonardis, Elisa Ricci, Stefan Roth, Olga Russakovsky, Torsten Sattler, Gül Varol (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2025
  DOI: 10.1007/978-3-031-73226-3_14
  BibTeX: Download

2024

Conference Contributions

• Qiu J., Aubreville M., Wilm F., Öttl M., Utz J., Schlereth M., Breininger K.:
  Leveraging Image Captions for Selective Whole Slide Image Annotation
  27th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2024 (Marrakesh, MAR, October 6, 2024 - October 10, 2024)
  In: Marius George Linguraru, Qi Dou, Aasa Feragen, Stamatia Giannarou, Ben Glocker, Karim Lekadir, Julia A. Schnabel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
  DOI: 10.1007/978-3-031-72390-2_20
  BibTeX: Download

2023

Conference Contributions

• Qiu J., Wilm F., Öttl M., Schlereth M., Liu C., Heimann T., Aubreville M., Breininger K.:
  Adaptive Region Selection for Active Learning in Whole Slide Image Semantic Segmentation
  In: The 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023) 2023
  DOI: 10.48550/arXiv.2307.07168
  BibTeX: Download
• Öttl M., Steenpaß J., Rübner M., Geppert CI., Qiu J., Wilm F., Hartmann A., Beckmann M., Fasching P., Maier A., Erber R., Breininger K.:
  Improved HER2 Tumor Segmentation with Subtype Balancing Using Deep Generative Networks
  20th IEEE International Symposium on Biomedical Imaging, ISBI 2023 (Cartagena, April 18, 2023 - April 21, 2023)
  In: Proceedings - International Symposium on Biomedical Imaging 2023
  DOI: 10.1109/ISBI53787.2023.10230503
  BibTeX: Download
• Wilm F., Fragoso M., Bertram CA., Stathonikos N., Öttl M., Qiu J., Klopfleisch R., Maier A., Breininger K., Aubreville M.:
  Multi-scanner Canine Cutaneous Squamous Cell Carcinoma Histopathology Dataset
  Bildverarbeitung für die Medizin Workshop, BVM 2023 (Braunschweig, July 2, 2023 - July 4, 2023)
  In: Thomas M. Deserno, Heinz Handels, Andreas Maier, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2023
  DOI: 10.1007/978-3-658-41657-7_46
  BibTeX: Download
• Rodriguez Salas D., Öttl M., Seuret M., Packhäuser K., Maier A.:
  Using Forestnets for Partial Fine-Tuning Prior to Breast Cancer Detection in Ultrasounds
  2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) (Cartagena, Colombia, April 18, 2023 - April 21, 2023)
  In: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) 2023
  DOI: 10.1109/ISBI53787.2023.10230424
  BibTeX: Download

2022

Conference Contributions

• Öttl M., Mönius J., Marzahl C., Rübner M., Geppert CI., Hartmann A., Beckmann M., Fasching P., Maier A., Erber R., Breininger K.:
  Superpixel Pre-segmentation of HER2 Slides for Efficient Annotation
  German Workshop on Medical Image Computing, 2022 (Heidelberg, DEU, June 26, 2022 - June 28, 2022)
  In: Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2022
  DOI: 10.1007/978-3-658-36932-3_54
  BibTeX: Download